9GHH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9GHH_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_86769.4 | |
| HL_9GHH_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_9GHH_003 | 1/A/122:127 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_9GHH_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
| HL_9GHH_005 | 1/A/159:169 | No text annotation | ||
| HL_9GHH_006 | 1/A/197:204 | No text annotation | homologous HL_9DFE_005 HL_30068.2 | |
| HL_9GHH_007 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_9GHH_008 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_9GHH_009 | 1/A/283:288 | No text annotation | homologous HL_4WF9_009 HL_81100.2 | |
| HL_9GHH_010 | 1/A/348:355 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_9GHH_011 | 1/A/362:366 | No text annotation | geometric HL_8G9Z_001 HL_75660.5 | |
| HL_9GHH_012 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_9GHH_013 | 1/A/428:438 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_9GHH_014 | 1/A/456:463 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_9GHH_015 | 1/A/508:513 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_9GHH_016 | 1/A/533:538 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_9GHH_017 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_9GHH_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.8 | |
| HL_9GHH_019 | 1/A/655:661 | GNRA | geometric HL_3V7E_003 HL_37824.7 | |
| HL_9GHH_020 | 1/A/674:679 | GNRA | homologous HL_9DFE_018 HL_37824.7 | |
| HL_9GHH_021 | 1/A/686:692 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_9GHH_022 | 1/A/757:764 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_9GHH_023 | 1/A/789:798 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_9GHH_024 | 1/A/824:830 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
| HL_9GHH_025 | 1/A/871:876 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_9GHH_026 | 1/A/999:1006 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_9GHH_027 | 1/A/1022:1029 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_9GHH_028 | 1/A/1108:1118 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_9GHH_029 | 1/A/1136:1143 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_9GHH_030 | 1/A/1214:1218 | No text annotation | ||
| HL_9GHH_031 | 1/A/1260:1265 | GNRA | homologous HL_4WF9_031 HL_37824.7 | |
| HL_9GHH_032 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.8 | |
| HL_9GHH_033 | 1/A/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_9GHH_034 | 1/A/1400:1405 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_9GHH_035 | 1/A/1426:1435 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_9GHH_036 | 1/A/1495:1505 | No text annotation | ||
| HL_9GHH_037 | 1/A/1535:1541 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_9GHH_038 | 1/A/1579:1585 | No text annotation | ||
| HL_9GHH_039 | 1/A/1612:1615 | Mini UNCG | homologous HL_9DFE_037 HL_48778.2 | |
| HL_9GHH_040 | 1/A/1656:1663 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_9GHH_041 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_9GHH_042 | 1/A/1735:1740 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_9GHH_043 | 1/A/1762:1767 | GNRA | homologous HL_4WF9_071 HL_37824.7 | |
| HL_9GHH_044 | 1/A/1779:1783 | No text annotation | homologous HL_9DFE_042 HL_80709.3 | |
| HL_9GHH_045 | 1/A/1804:1814 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_9GHH_046 | 1/A/1833:1838 | GNRA | homologous HL_9DFE_044 HL_37824.7 | |
| HL_9GHH_047 | 1/A/1895:1900 | No text annotation | ||
| HL_9GHH_048 | 1/A/1937:1947 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_9GHH_049 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_9GHH_050 | 1/A/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_9GHH_051 | 1/A/2236:2242 | No text annotation | homologous HL_4WF9_048 HL_49922.4 | |
| HL_9GHH_052 | 1/A/2275:2283 | No text annotation | homologous HL_9DFE_051 HL_85367.2 | |
| HL_9GHH_053 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_9GHH_054 | 1/A/2331:2339 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_9GHH_055 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
| HL_9GHH_056 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_9GHH_057 | 1/A/2401:2406 | GNRA | homologous HL_9DFE_056 HL_37824.7 | |
| HL_9GHH_058 | 1/A/2431:2440 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_9GHH_059 | 1/A/2498:2506 | No text annotation | homologous HL_9DFE_058 HL_32735.2 | |
| HL_9GHH_060 | 1/A/2555:2562 | No text annotation | homologous HL_4WF9_057 HL_31585.4 | |
| HL_9GHH_061 | 1/A/2578:2584 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
| HL_9GHH_062 | 1/A/2621:2626 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_9GHH_063 | 1/A/2685:2690 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_9GHH_064 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_9GHH_065 | 1/A/2772:2786 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_9GHH_066 | 1/A/2819:2824 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_9GHH_067 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_64690.6 | |
| HL_9GHH_068 | 1/A/2876:2881 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_9GHH_069 | 1/B/32:46 | No text annotation | geometric HL_4V9F_074 HL_97756.2 | |
| HL_9GHH_070 | 1/B/36:42 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_9GHH_071 | 1/B/83:88 | No text annotation | geometric HL_8P9A_114 HL_53890.2 | |
| HL_9GHH_072 | 1/D/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_9GHH_073 | 1/D/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_9GHH_074 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_8Z1P_002 HL_28252.8 | |
| HL_9GHH_075 | 1/F/13:22 | No text annotation | homologous HL_9DFC_103 HL_93616.2 | |
| HL_9GHH_076 | 1/F/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 HL_06059.6 | |
| HL_9GHH_077 | 1/F/53:61 | T-loop with 2 stacked bulged bases | homologous HL_7UQ6_003 HL_28252.8 | |
| HL_9GHH_078 | 1/a/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_9GHH_079 | 1/a/72:97 | No text annotation | ||
| HL_9GHH_080 | 1/a/78:91 | No text annotation | ||
| HL_9GHH_081 | 1/a/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_9GHH_082 | 1/a/193:198 | No text annotation | geometric HL_3NDB_001 HL_57875.1 | |
| HL_9GHH_083 | 1/a/218:222 | Mini UNCG | geometric HL_8VMA_002 HL_48778.2 | |
| HL_9GHH_084 | 1/a/267:275 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_9GHH_085 | 1/a/304:309 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_9GHH_086 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_9GHH_087 | 1/a/350:355 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_9GHH_088 | 1/a/387:392 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_9GHH_089 | 1/a/427:432 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_9GHH_090 | 1/a/470:479 | No text annotation | geometric HL_4TUE_219 HL_75293.5 | |
| HL_9GHH_091 | 1/a/530:535 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_9GHH_092 | 1/a/625:631 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_9GHH_093 | 1/a/697:706 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_9GHH_094 | 1/a/734:739 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_9GHH_095 | 1/a/794:804 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_9GHH_096 | 1/a/871:876 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_9GHH_097 | 1/a/906:911 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_9GHH_098 | 1/a/972:981 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_9GHH_099 | 1/a/1021:1026 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_9GHH_100 | 1/a/1087:1092 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_9GHH_101 | 1/a/1100:1107 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_9GHH_102 | 1/a/1144:1151 | No text annotation | ||
| HL_9GHH_103 | 1/a/1175:1181 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_9GHH_104 | 1/a/1275:1280 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_9GHH_105 | 1/a/1324:1333 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_9GHH_106 | 1/a/1366:1376 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_9GHH_107 | 1/a/1460:1464 | No text annotation | ||
| HL_9GHH_108 | 1/a/1526:1531 | GNRA | homologous HL_4LFB_032 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9GHH_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_9GHH_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_9DFE_002 IL_31462.6 | |
| IL_9GHH_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_9GHH_004 | 1/A/56:76, 1/A/109:113 | No text annotation | ||
| IL_9GHH_005 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_4WF9_004 IL_01488.3 | |
| IL_9GHH_006 | 1/A/152:153, 1/A/175:177 | Single bulged A | homologous IL_4WF9_006 IL_31462.6 | |
| IL_9GHH_007 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_9GHH_008 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_84694.2 | |
| IL_9GHH_009 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_04346.10 | |
| IL_9GHH_010 | 1/A/305:306, 1/A/409:412 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_316 IL_68140.4 | |
| IL_9GHH_011 | 1/A/310:316, 1/A/403:405 | No text annotation | ||
| IL_9GHH_012 | 1/A/319:327, 1/A/399:400 | No text annotation | ||
| IL_9GHH_013 | 1/A/336:338, 1/A/386:390 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_9GHH_014 | 1/A/527:530, 1/A/541:554 | No text annotation | geometric IL_4WF9_015 IL_81516.2 | |
| IL_9GHH_015 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_9GHH_016 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_9GHH_017 | 1/A/638:640, 1/A/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_07785.1 | |
| IL_9GHH_018 | 1/A/649:653, 1/A/663:667 | No text annotation | homologous IL_9DFE_014 IL_66798.2 | |
| IL_9GHH_019 | 1/A/717:719, 1/A/851:853 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_9GHH_020 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_9GHH_021 | 1/A/742:743, 1/A/808:810 | Single bulged A | homologous IL_4WF9_022 IL_31462.6 | |
| IL_9GHH_022 | 1/A/747:748, 1/A/773:775 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
| IL_9GHH_023 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_9DFE_019 IL_50730.2 | |
| IL_9GHH_024 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_9GHH_025 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | homologous IL_4WF9_027 IL_06549.2 | |
| IL_9GHH_026 | 1/A/882:883, 1/A/984:986 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_9GHH_027 | 1/A/889:893, 1/A/975:978 | No text annotation | homologous IL_4WF9_029 IL_06300.1 | |
| IL_9GHH_028 | 1/A/897:898, 1/A/969:971 | Single bulged U | homologous IL_4WF9_030 IL_89505.4 | |
| IL_9GHH_029 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4WF9_031 IL_29198.2 | |
| IL_9GHH_030 | 1/A/907:908, 1/A/958:960 | Minor groove platform | homologous IL_9DFE_027 IL_51454.3 | |
| IL_9GHH_031 | 1/A/909:913, 1/A/954:957 | C-loop with bulged stacked A's | homologous IL_4WF9_033 IL_26222.2 | |
| IL_9GHH_033 | 1/A/920:925, 1/A/942:947 | No text annotation | ||
| IL_9GHH_034 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C | homologous IL_4WF9_035 IL_61258.15 | |
| IL_9GHH_035 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_9GHH_036 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_9GHH_037 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U | homologous IL_4WF9_038 IL_89505.4 | |
| IL_9GHH_038 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | homologous IL_5J7L_280 IL_57188.5 | |
| IL_9GHH_039 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
| IL_9GHH_040 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_9GHH_041 | 1/A/1081:1083, 1/A/1160:1162 | Isolated non-canonical cWW pair | homologous IL_4WF9_042 IL_87907.2 | |
| IL_9GHH_042 | 1/A/1087:1095, 1/A/1152:1156 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_9GHH_043 | 1/A/1103:1106, 1/A/1120:1123 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_9GHH_044 | 1/A/1131:1135, 1/A/1144:1146 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_9GHH_045 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_9GHH_046 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10167.6 | |
| IL_9GHH_047 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_9GHH_048 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_31737.3 | |
| IL_9GHH_049 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_04346.10 | |
| IL_9GHH_050 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW | geometric IL_9DFE_049 IL_50694.7 | |
| IL_9GHH_051 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_9GHH_052 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_9GHH_053 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_9GHH_054 | 1/A/1448:1451, 1/A/1632:1635 | Double sheared; A in syn | geometric IL_8T29_001 IL_09705.15 | |
| IL_9GHH_055 | 1/A/1452:1460, 1/A/1628:1631 | No text annotation | ||
| IL_9GHH_056 | 1/A/1461:1465, 1/A/1624:1627 | Other IL | homologous IL_4WF9_054 IL_99646.2 | |
| IL_9GHH_057 | 1/A/1476:1479, 1/A/1604:1608 | No text annotation | ||
| IL_9GHH_058 | 1/A/1481:1484, 1/A/1598:1602 | No text annotation | homologous IL_9DFE_056 IL_99646.2 | |
| IL_9GHH_059 | 1/A/1512:1515, 1/A/1565:1569 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_9GHH_060 | 1/A/1519:1522, 1/A/1558:1561 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_9GHH_061 | 1/A/1525:1526, 1/A/1549:1555 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_9GHH_062 | 1/A/1532:1534, 1/A/1542:1543 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_9GHH_063 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_9GHH_064 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_9GHH_065 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_9DFE_065 IL_50694.7 | |
| IL_9GHH_066 | 1/A/1710:1718, 1/A/2017:2021 | No text annotation | geometric IL_5J7L_386 IL_22854.4 | |
| IL_9GHH_067 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_9GHH_068 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_9GHH_069 | 1/A/1757:1759, 1/A/1770:1772 | No text annotation | ||
| IL_9GHH_070 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_9GHH_071 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_9GHH_072 | 1/A/1864:1867, 1/A/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_9GHH_073 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_9GHH_074 | 1/A/1873:1876, 1/A/1920:1921 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_9GHH_075 | 1/A/1878:1882, 1/A/1914:1918 | No text annotation | homologous IL_9DFE_074 IL_89021.2 | |
| IL_9GHH_076 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared | homologous IL_9DFE_075 IL_50730.2 | |
| IL_9GHH_077 | 1/A/1891:1894, 1/A/1901:1905 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_9GHH_078 | 1/A/1960:1961, 1/A/1991:1994 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_9GHH_079 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation | homologous IL_5J7L_319 IL_42218.2 | |
| IL_9GHH_080 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_9DFE_078 IL_48076.6 | |
| IL_9GHH_081 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_9GHH_082 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
| IL_9GHH_083 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_9GHH_084 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_85599.2 | |
| IL_9GHH_085 | 1/A/2123:2125, 1/A/2218:2220 | Isolated non-canonical cWW pair | geometric IL_7ZLQ_001 NA | |
| IL_9GHH_086 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G | homologous IL_4WF9_125 IL_00225.13 | |
| IL_9GHH_087 | 1/A/2324:2326, 1/A/2344:2348 | No text annotation | homologous IL_9DFE_088 IL_61476.2 | |
| IL_9GHH_088 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
| IL_9GHH_089 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_9GHH_090 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_9GHH_091 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform | homologous IL_5J7L_392 IL_48076.6 | |
| IL_9GHH_092 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_9GHH_093 | 1/A/2486:2488, 1/A/2516:2520 | No text annotation | homologous IL_9DFE_094 IL_51387.2 | |
| IL_9GHH_094 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_9GHH_095 | 1/A/2534:2535, 1/A/2607:2609 | No text annotation | homologous IL_9DFE_096 IL_07039.3 | |
| IL_9GHH_096 | 1/A/2537:2539, 1/A/2601:2605 | No text annotation | homologous IL_9DFE_097 IL_07785.1 | |
| IL_9GHH_097 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_9GHH_098 | 1/A/2549:2550, 1/A/2567:2570 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_9GHH_099 | 1/A/2618:2619, 1/A/2628:2630 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_9GHH_100 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_9GHH_101 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_9DFE_102 IL_16458.4 | |
| IL_9GHH_102 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
| IL_9GHH_103 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_9GHH_104 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_9GHH_105 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_49767.8 | |
| IL_9GHH_106 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_9GHH_107 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_9GHH_108 | 1/A/2867:2872, 1/A/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_9GHH_109 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_9DFE_110 IL_31462.6 | |
| IL_9GHH_110 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_9GHH_111 | 1/B/28:29, 1/B/49:52 | No text annotation | homologous IL_9DFE_112 IL_68140.4 | |
| IL_9GHH_112 | 1/B/32:36, 1/B/42:46 | No text annotation | homologous IL_9DFE_113 IL_58103.11 | |
| IL_9GHH_113 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_9GHH_114 | 1/B/78:80, 1/B/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_07785.1 | |
| IL_9GHH_115 | 1/a/31:33, 1/a/560:561 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_9GHH_116 | 1/a/45:46, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_9GHH_117 | 1/a/48:53, 1/a/367:369 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_9GHH_118 | 1/a/55:57, 1/a/364:365 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_9GHH_119 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_9GHH_120 | 1/a/68:70, 1/a/99:101 | Isolated non-canonical cWW pair | homologous IL_6CZR_118 NA | |
| IL_9GHH_121 | 1/a/72:78, 1/a/91:97 | No text annotation | ||
| IL_9GHH_122 | 1/a/128:131, 1/a/239:240 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_9GHH_123 | 1/a/132:136, 1/a/235:238 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_9GHH_124 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_9GHH_125 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_9GHH_126 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_9GHH_127 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_9GHH_128 | 1/a/375:377, 1/a/400:401 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_9GHH_129 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_9GHH_130 | 1/a/383:384, 1/a/395:397 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_9GHH_131 | 1/a/417:424, 1/a/435:441 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_9GHH_132 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_9GHH_133 | 1/a/458:464, 1/a/485:491 | No text annotation | ||
| IL_9GHH_134 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_9GHH_135 | 1/a/523:529, 1/a/536:544 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_9GHH_136 | 1/a/577:583, 1/a/889:890 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_9GHH_137 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_9GHH_138 | 1/a/602:604, 1/a/652:653 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_9GHH_139 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_9GHH_140 | 1/a/612:613, 1/a/640:642 | Single bulged U | geometric IL_4C7O_001 IL_89505.4 | |
| IL_9GHH_141 | 1/a/613:620, 1/a/636:640 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_9GHH_142 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_9GHH_143 | 1/a/664:666, 1/a/755:758 | Major groove platform with extra cWW | geometric IL_8C3A_405 NA | |
| IL_9GHH_144 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_9GHH_145 | 1/a/681:685, 1/a/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_9GHH_146 | 1/a/692:696, 1/a/707:714 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_9GHH_147 | 1/a/782:787, 1/a/811:813 | No text annotation | geometric IL_8P9A_423 IL_97273.1 | |
| IL_9GHH_148 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_9GHH_149 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_9GHH_150 | 1/a/931:932, 1/a/1403:1405 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_9GHH_151 | 1/a/934:936, 1/a/1400:1401 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_9GHH_152 | 1/a/942:944, 1/a/1390:1394 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_9GHH_153 | 1/a/962:963, 1/a/1236:1238 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9GHH_154 | 1/a/1002:1006, 1/a/1055:1056 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_9GHH_155 | 1/a/1007:1008, 1/a/1052:1054 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_9GHH_156 | 1/a/1059:1061, 1/a/1218:1219 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_9GHH_157 | 1/a/1063:1067, 1/a/1214:1216 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9GHH_158 | 1/a/1068:1069, 1/a/1209:1213 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_9GHH_159 | 1/a/1071:1072, 1/a/1205:1207 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
| IL_9GHH_160 | 1/a/1072:1074, 1/a/1203:1205 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_9GHH_161 | 1/a/1135:1138, 1/a/1155:1159 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_9GHH_162 | 1/a/1140:1143, 1/a/1152:1153 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_9GHH_163 | 1/a/1168:1171, 1/a/1185:1191 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_9GHH_164 | 1/a/1257:1263, 1/a/1294:1300 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_9GHH_165 | 1/a/1265:1268, 1/a/1287:1292 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_9GHH_166 | 1/a/1269:1273, 1/a/1282:1286 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_9GHH_167 | 1/a/1313:1318, 1/a/1339:1344 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_9GHH_168 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_9GHH_169 | 1/a/1411:1414, 1/a/1508:1512 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_9GHH_170 | 1/a/1415:1417, 1/a/1505:1507 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_9GHH_171 | 1/a/1417:1419, 1/a/1502:1505 | No text annotation | geometric IL_8UO6_002 IL_31737.3 | |
| IL_9GHH_172 | 1/a/1422:1424, 1/a/1497:1499 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_9GHH_173 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_9GHH_174 | 1/a/1434:1437, 1/a/1484:1487 | No text annotation | geometric IL_8P9A_327 IL_85033.2 | |
| IL_9GHH_175 | 1/a/1440:1445, 1/a/1477:1481 | No text annotation | geometric IL_3BBM_001 IL_80926.1 | |
| IL_9GHH_176 | 1/a/1445:1447, 1/a/1475:1477 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_9GHH_177 | 1/a/1450:1453, 1/a/1470:1472 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_9GHH_178 | 1/a/1455:1458, 1/a/1466:1468 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9GHH_032 | Isolated cWS basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9GHH_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | geometric J3_4WF9_010 J3_60031.2 | |
| J3_9GHH_002 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_9GHH_003 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_9GHH_004 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_9GHH_005 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_9GHH_006 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_9GHH_007 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_4WF9_002 J3_64189.2 | |
| J3_9GHH_008 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_9DFE_008 J3_44724.7 | |
| J3_9GHH_009 | 1/A/1099:1101, 1/A/1125:1131, 1/A/1146:1148 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_9GHH_010 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.6 | |
| J3_9GHH_011 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_9GHH_012 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_4WF9_016 J3_31965.2 | |
| J3_9GHH_013 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_9GHH_014 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_9GHH_015 | 1/A/2309:2311, 1/A/2411:2422, 1/A/2448:2454 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_9GHH_016 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | homologous J3_9DFE_016 J3_61124.2 | |
| J3_9GHH_017 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_9GHH_018 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation | homologous J3_9DFE_018 J3_24127.1 | |
| J3_9GHH_019 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_9GHH_020 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation | ||
| J3_9GHH_021 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_9GHH_022 | 1/a/47:53, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_9GHH_023 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_9GHH_024 | 1/a/594:596, 1/a/659:663, 1/a/759:763 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_9GHH_025 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_9GHH_026 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_9GHH_027 | 1/a/945:948, 1/a/1354:1360, 1/a/1382:1389 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_9GHH_028 | 1/a/952:955, 1/a/1245:1247, 1/a/1347:1350 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_9GHH_029 | 1/a/964:971, 1/a/982:993, 1/a/1231:1235 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_9GHH_030 | 1/a/999:1002, 1/a/1056:1058, 1/a/1220:1225 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_9GHH_031 | 1/a/999:1006, 1/a/1055:1058, 1/a/1220:1225 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_9GHH_032 | 1/a/1074:1079, 1/a/1118:1124, 1/a/1197:1203 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_9GHH_033 | 1/a/1084:1085, 1/a/1094:1097, 1/a/1110:1113 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_9GHH_034 | 1/a/1127:1129, 1/a/1165:1168, 1/a/1191:1194 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_9GHH_035 | 1/a/1127:1129, 1/a/1165:1171, 1/a/1185:1194 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_9GHH_036 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_9GHH_001 | 1/A/271:272, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_4WF9_001 J4_45801.6 | |
| J4_9GHH_002 | 1/A/340:344, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_9GHH_003 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_9GHH_004 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1692, 1/A/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.5 | |
| J4_9GHH_005 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_9GHH_006 | 1/A/1350:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1647 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_9GHH_007 | 1/A/1488:1490, 1/A/1510:1511, 1/A/1570:1574, 1/A/1590:1594 | No text annotation | ||
| J4_9GHH_008 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_9GHH_009 | 1/A/1860:1862, 1/A/1932:1933, 1/A/1951:1960, 1/A/1994:1999 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_9GHH_010 | 1/A/2312:2316, 1/A/2370:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_9GHH_011 | 1/A/2670:2673, 1/A/2701:2703, 1/A/2758:2762, 1/A/2796:2798 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_9GHH_012 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | tRNA junction | homologous J4_1QU2_001 J4_70449.28 | |
| J4_9GHH_013 | 1/F/7:10, 1/F/25:27, 1/F/43:49, 1/F/65:66 | No text annotation | homologous J4_6CFJ_015 J4_70449.28 | |
| J4_9GHH_014 | 1/a/114:122, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_9GHH_015 | 1/a/142:144, 1/a/178:185, 1/a/206:213, 1/a/227:229 | No text annotation | ||
| J4_9GHH_016 | 1/a/583:585, 1/a/772:777, 1/a/818:829, 1/a/888:889 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J5_9GHH_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_9GHH_002 | 1/A/271:276, 1/A/295:302, 1/A/415:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
| J5_9GHH_003 | 1/A/576:578, 1/A/603:607, 1/A/620:622, 1/A/1299:1300, 1/A/2044:2045 | No text annotation | homologous J5_4WF9_003 J5_43153.5 | |
| J5_9GHH_004 | 1/A/627:632, 1/A/713:716, 1/A/854:857, 1/A/1234:1235, 1/A/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_9GHH_005 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_62523.6 | |
| J5_9GHH_006 | 1/A/2084:2091, 1/A/2473:2480, 1/A/2527:2534, 1/A/2609:2615, 1/A/2633:2638 | No text annotation | ||
| J5_9GHH_007 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_9GHH_008 | 1/a/37:40, 1/a/411:414, 1/a/444:449, 1/a/501:508, 1/a/553:556 | No text annotation | ||
| J5_9GHH_009 | 1/a/59:62, 1/a/105:112, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_9GHH_001 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/472:479 | No text annotation | ||
| J6_9GHH_002 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2311, 1/A/2411:2422, 1/A/2448:2462 | No text annotation | ||
| J7_9GHH_001 | 1/A/8:15, 1/A/570:576, 1/A/2045:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2914 | No text annotation | ||
| J7_9GHH_002 | 1/A/862:867, 1/A/880:881, 1/A/987:990, 1/A/1015:1020, 1/A/1031:1035, 1/A/1207:1208, 1/A/1224:1229 | No text annotation |
Problematic loops
No problematic loops
Coloring options: