HL_9GHH_020

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_020 not in the Motif Atlas

Homologous match to HL_9DFE_018

Geometric discrepancy: 0.0679

The information below is about HL_9DFE_018

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHH|1|A|C|674
9GHH|1|A|G|675
9GHH|1|A|A|676
9GHH|1|A|A|677
9GHH|1|A|A|678
9GHH|1|A|G|679

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15