HL_9GHH_023
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGU(5MU)GAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 9GHH|1|A|5MU|792, 9GHH|1|A|A|796, 9GHH|1|A|A|797
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHH_023 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.0743
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9GHH|1|A|C|789
9GHH|1|A|G|790
9GHH|1|A|U|791
9GHH|1|A|5MU|792
9GHH|1|A|G|793
9GHH|1|A|A|794
9GHH|1|A|A|795
9GHH|1|A|A|796
9GHH|1|A|A|797
9GHH|1|A|G|798
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain 7
- 50S ribosomal protein L34
- Chain H
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L22
Coloring options: