HL_9GHH_027

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_027 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.0746

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|G|1022
9GHH|1|A|A|1023
9GHH|1|A|A|1024
9GHH|1|A|A|1025
9GHH|1|A|C|1026
9GHH|1|A|A|1027
9GHH|1|A|G|1028
9GHH|1|A|C|1029

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21