HL_9GHH_028

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9GHH|1|A|A|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1805

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|C|1108
9GHH|1|A|U|1109
9GHH|1|A|U|1110
9GHH|1|A|A|1111
9GHH|1|A|G|1112
9GHH|1|A|A|1113
9GHH|1|A|A|1114
9GHH|1|A|G|1115
9GHH|1|A|C|1116
9GHH|1|A|A|1117
9GHH|1|A|G|1118

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Far1