HL_9GHH_035

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9GHH|1|A|U|1433, 9GHH|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|G|1426
9GHH|1|A|U|1427
9GHH|1|A|U|1428
9GHH|1|A|G|1429
9GHH|1|A|A|1430
9GHH|1|A|U|1431
9GHH|1|A|A|1432
9GHH|1|A|U|1433
9GHH|1|A|U|1434
9GHH|1|A|C|1435

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23