HL_9GHH_041

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

9GHH|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0778

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9GHH|1|A|A|1673
9GHH|1|A|U|1674
9GHH|1|A|G|1675
9GHH|1|A|A|1676
9GHH|1|A|G|1677
9GHH|1|A|A|1678
9GHH|1|A|A|1679
9GHH|1|A|U|1680
9GHH|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains