HL_9GHH_052

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9GHH|1|A|G|2277

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_052 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.1017

The information below is about HL_9DFE_051

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9GHH|1|A|C|2275
9GHH|1|A|U|2276
9GHH|1|A|G|2277
9GHH|1|A|OMG|2278
9GHH|1|A|G|2279
9GHH|1|A|G|2280
9GHH|1|A|C|2281
9GHH|1|A|G|2282
9GHH|1|A|G|2283

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Transfer RNA; tRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27