HL_9GHH_055
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHH_055 not in the Motif Atlas
- Homologous match to HL_4WF9_052
- Geometric discrepancy: 0.1226
- The information below is about HL_4WF9_052
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9GHH|1|A|U|2351
9GHH|1|A|G|2352
9GHH|1|A|U|2353
9GHH|1|A|A|2354
9GHH|1|A|A|2355
9GHH|1|A|A|2356
9GHH|1|A|G|2357
9GHH|1|A|G|2358
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- Transfer RNA; tRNA
- Chain J
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
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