HL_9GHH_058

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9GHH|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_058 not in the Motif Atlas

Homologous match to HL_9DFE_057

Geometric discrepancy: 0.1025

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHH|1|A|C|2431
9GHH|1|A|G|2432
9GHH|1|A|C|2433
9GHH|1|A|A|2434
9GHH|1|A|U|2435
9GHH|1|A|G|2436
9GHH|1|A|G|2437
9GHH|1|A|A|2438
9GHH|1|A|A|2439
9GHH|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15