HL_9GHH_060

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

9GHH|1|A|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1149

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GHH|1|A|U|2555
9GHH|1|A|G|2556
9GHH|1|A|U|2557
9GHH|1|A|A|2558
9GHH|1|A|G|2559
9GHH|1|A|U|2560
9GHH|1|A|C|2561
9GHH|1|A|G|2562

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain C

Far1

Chain K

50S ribosomal protein L6