HL_9GHH_072

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9GHH|1|D|C|16, 9GHH|1|D|G|18, 9GHH|1|D|G|19, 9GHH|1|D|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_072 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.2273

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHH|1|D|C|13
9GHH|1|D|A|14
9GHH|1|D|G|15
9GHH|1|D|C|16
9GHH|1|D|C|17
9GHH|1|D|U|17|||A
9GHH|1|D|G|18
9GHH|1|D|G|19
9GHH|1|D|U|20
9GHH|1|D|A|21
9GHH|1|D|G|22

Current chains

Chain D

E-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA