HL_9GHH_100

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_100 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.1013

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHH|1|a|C|1087
9GHH|1|a|G|1088
9GHH|1|a|U|1089
9GHH|1|a|G|1090
9GHH|1|a|A|1091
9GHH|1|a|G|1092

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain f

30S ribosomal protein S5