HL_9GHH_103

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

9GHH|1|a|C|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_103 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3295

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9GHH|1|a|U|1175
9GHH|1|a|G|1176
9GHH|1|a|A|1177
9GHH|1|a|C|1178
9GHH|1|a|A|1179
9GHH|1|a|A|1180
9GHH|1|a|A|1181

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2