HL_9GJ6_001

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9GJ6|1|1|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GJ6_001 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.1156

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9GJ6|1|1|U|204
9GJ6|1|1|C|205
9GJ6|1|1|U|206
9GJ6|1|1|G|207
9GJ6|1|1|A|208
9GJ6|1|1|U|209
9GJ6|1|1|C|210
9GJ6|1|1|G|211

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

N-alpha-acetyltransferase 15, NatA auxiliary subunit

Chain LY

Large ribosomal subunit protein uL24