9GJ6 | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_9GJ6_002	1/1/222:226	No text annotation	geometric HL_9H3G_010 HL_75660.11
HL_9GJ6_003	1/1/230:238	No text annotation	homologous HL_8GLP_007 HL_27670.7
HL_9GJ6_005	1/1/2376:2384	T-loop with 2 stacked bulged bases	homologous HL_8GLP_033 HL_33597.8
HL_9GJ6_006	1/1/2523:2532	No text annotation	homologous HL_8GLP_038 HL_77449.4
HL_9GJ6_008	1/1/4907:4914	No text annotation	homologous HL_8GLP_074 HL_31089.4
HL_9GJ6_009	1/1/4975:4983	No text annotation	homologous HL_8GLP_075 HL_37889.4
HL_9GJ6_011	1/8/47:56	No text annotation	homologous HL_8GLP_078 HL_17803.4

loop id	Problem	Sequence
HL_9GJ6_001	poor quality numbers	No text annotation
HL_9GJ6_004	poor quality numbers	No text annotation
HL_9GJ6_007	poor quality numbers	No text annotation
HL_9GJ6_010	poor quality numbers	No text annotation
HL_9GJ6_012	poor quality numbers	No text annotation

Loop id	Location	Annotation; motif group	Mapped info
IL_9GJ6_002	1/1/387:390, 1/1/401:414	No text annotation	homologous IL_8GLP_019 IL_44923.4
IL_9GJ6_012	1/1/508:510, 1/1/649:650	Single bulged A	homologous IL_8GLP_032 IL_14190.5
IL_9GJ6_016	1/1/4756:4765, 1/1/4869:4877	No text annotation	homologous IL_8GLP_168 NA
IL_9GJ6_021	1/1/4972:4975, 1/1/4983:4986	Tandem non-canonical cWW pairs	homologous IL_9AXU_117 IL_71194.5
IL_9GJ6_024	1/1/5000:5002, 1/1/5045:5050	No text annotation	homologous IL_9H3G_143 IL_00086.4
IL_9GJ6_025	1/1/5003:5009, 1/1/5039:5044	No text annotation	homologous IL_8GLP_176 NA
IL_9GJ6_026	1/1/5012:5017, 1/1/5032:5036	No text annotation

loop id	Problem	Sequence
IL_9GJ6_001	poor quality numbers	Single bulged U
IL_9GJ6_003	poor quality numbers	Single bulged C
IL_9GJ6_004	poor quality numbers	Isolated non-canonical cWW pair
IL_9GJ6_005	poor quality numbers	No text annotation
IL_9GJ6_006	poor quality numbers	Multiple bulged bases
IL_9GJ6_007	poor quality numbers	No text annotation
IL_9GJ6_008	poor quality numbers	Tandem non-canonical cWW pairs
IL_9GJ6_009	poor quality numbers	Isolated non-canonical cWW pair
IL_9GJ6_010	poor quality numbers	Isolated non-canonical cWW pair
IL_9GJ6_011	poor quality numbers	No text annotation
IL_9GJ6_013	poor quality numbers	No text annotation
IL_9GJ6_014	poor quality numbers	No text annotation
IL_9GJ6_015	poor quality numbers	No text annotation
IL_9GJ6_017	poor quality numbers	Isolated non-canonical cWW pair
IL_9GJ6_018	poor quality numbers	Tandem non-canonical cWW pairs
IL_9GJ6_019	poor quality numbers	No text annotation
IL_9GJ6_020	poor quality numbers	Single bulged C
IL_9GJ6_022	poor quality numbers	Isolated non-canonical cWW pair
IL_9GJ6_023	poor quality numbers	Single bulged C
IL_9GJ6_027	poor quality numbers	No text annotation

Loop id	Location	Annotation; motif group	Mapped info
J3_9GJ6_001	1/1/196:199, 1/1/215:228, 1/1/240:244	No text annotation	homologous J3_8GLP_023 NA
J3_9GJ6_002	1/1/4751:4754, 1/1/4879:4883, 1/1/4936:4948	No text annotation	homologous J3_8GLP_036 NA
J3_9GJ6_004	1/8/44:45, 1/8/58:64, 1/8/95:99	No text annotation	homologous J3_8GLP_039 J3_01004.4
J4_9GJ6_001	1/1/196:199, 1/1/215:222, 1/1/226:228, 1/1/240:244	No text annotation	homologous J4_8GLP_002 NA

#	loop id	Problem	Sequence
	J3_9GJ6_003	poor quality numbers	No text annotation

9GJ6 Hairpin, Internal, and multi-helix Junction Loop Motifs