HL_9GJ6_002

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9GJ6|1|1|U|224, 9GJ6|1|1|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GJ6_002 not in the Motif Atlas

Geometric match to HL_9H3G_010

Geometric discrepancy: 0.1011

The information below is about HL_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9GJ6|1|1|C|222
9GJ6|1|1|G|223
9GJ6|1|1|U|224
9GJ6|1|1|G|225
9GJ6|1|1|G|226

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

Large ribosomal subunit protein uL24