HL_9GJ6_004

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GJ6_004 not in the Motif Atlas

Homologous match to HL_8GLP_118

Geometric discrepancy: 0.1171

The information below is about HL_8GLP_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9GJ6|1|1|U|393
9GJ6|1|1|G|394
9GJ6|1|1|A|395
9GJ6|1|1|A|396
9GJ6|1|1|G|397
9GJ6|1|1|A|398

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17