HL_9GJ6_005
3D structure
- PDB id
- 9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with NatA in proximal and distal position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GJ6_005 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.1835
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9GJ6|1|1|A|2376
9GJ6|1|1|C|2377
9GJ6|1|1|G|2378
9GJ6|1|1|A|2379
9GJ6|1|1|G|2380
9GJ6|1|1|A|2381
9GJ6|1|1|A|2382
9GJ6|1|1|C|2383
9GJ6|1|1|U|2384
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain D
- N-alpha-acetyltransferase 15, NatA auxiliary subunit
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
Coloring options: