HL_9GMO_005

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9GMO|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4339

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9GMO|1|A|U|204
9GMO|1|A|C|205
9GMO|1|A|U|206
9GMO|1|A|G|207
9GMO|1|A|A|208
9GMO|1|A|U|209
9GMO|1|A|C|210
9GMO|1|A|G|211

Current chains

Chain A

28S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein uL24

Chain Y

60S ribosomal protein L32