9GMO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9GMO_001 | 1/A/37:44 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_9GMO_002 | 1/A/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_9GMO_003 | 1/A/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_9GMO_005 | 1/A/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_9GMO_006 | 1/A/222:226 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_9GMO_007 | 1/A/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_9GMO_008 | 1/A/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_9GMO_009 | 1/A/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_9GMO_010 | 1/A/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_9GMO_011 | 1/A/393:398 | GNRA | homologous HL_8P9A_123 HL_34789.1 | |
| HL_9GMO_012 | 1/A/1178:1183 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.1 | |
| HL_9GMO_013 | 1/A/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_9GMO_014 | 1/A/1363:1374 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_9GMO_015 | 1/A/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_9GMO_016 | 1/A/1436:1448 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9GMO_017 | 1/A/1480:1484 | Mini UNCG | geometric HL_8UIW_004 HL_12626.1 | |
| HL_9GMO_019 | 1/A/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_9GMO_020 | 1/A/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_9GMO_021 | 1/A/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9GMO_022 | 1/A/1816:1823 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_9GMO_023 | 1/A/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_9GMO_024 | 1/A/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_9GMO_025 | 1/A/2257:2261 | Mini UNCG | geometric HL_8C3A_072 NA | |
| HL_9GMO_026 | 1/A/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_9GMO_027 | 1/A/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_9GMO_028 | 1/A/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_9GMO_029 | 1/A/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_9GMO_030 | 1/A/2469:2471 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9GMO_031 | 1/A/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_9GMO_033 | 1/A/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_9GMO_034 | 1/A/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
| HL_9GMO_035 | 1/A/2664:2670 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_9GMO_036 | 1/A/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_9GMO_037 | 1/A/2792:2799 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_9GMO_038 | 1/A/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_9GMO_039 | 1/A/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_9GMO_040 | 1/A/3614:3618 | No text annotation | ||
| HL_9GMO_041 | 1/A/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_9GMO_042 | 1/A/3668:3674 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_9GMO_043 | 1/A/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
| HL_9GMO_044 | 1/A/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_9GMO_045 | 1/A/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_9GMO_046 | 1/A/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_9GMO_068 | 1/A/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_9GMO_048 | 1/A/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_9GMO_049 | 1/A/4270:4277 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.1 | |
| HL_9GMO_050 | 1/A/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_9GMO_051 | 1/A/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_9GMO_052 | 1/A/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_9GMO_053 | 1/A/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_9GMO_069 | 1/A/4474:4481 | GNRA variation | homologous HL_8CRE_061 NA | |
| HL_9GMO_055 | 1/A/4497:4503 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_9GMO_056 | 1/A/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_9GMO_057 | 1/A/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_9GMO_058 | 1/A/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_9GMO_059 | 1/A/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_9GMO_060 | 1/A/4907:4914 | No text annotation | geometric HL_8G9Z_001 HL_75660.6 | |
| HL_9GMO_061 | 1/A/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_9GMO_062 | 1/B/32:45 | No text annotation | geometric HL_1MJI_004 HL_97756.3 | |
| HL_9GMO_063 | 1/B/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_9GMO_064 | 1/B/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_9GMO_065 | 1/C/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_9GMO_066 | 1/C/107:112 | No text annotation | homologous HL_8P9A_188 HL_13184.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9GMO_004 | No text annotation | ||
| HL_9GMO_067 | No text annotation | ||
| HL_9GMO_018 | GNRA | ||
| HL_9GMO_032 | GNRA related | ||
| HL_9GMO_047 | No text annotation | ||
| HL_9GMO_054 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9GMO_001 | 1/A/6:7, 1/C/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9GMO_002 | 1/A/12:14, 1/C/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.1 | |
| IL_9GMO_003 | 1/A/16:18, 1/C/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9GMO_004 | 1/A/26:27, 1/A/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_9GMO_005 | 1/A/30:37, 1/A/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_9GMO_006 | 1/A/81:88, 1/A/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_1JBR_001 NA | |
| IL_9GMO_007 | 1/A/118:121, 1/A/152:153 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_9GMO_008 | 1/A/118:122, 1/A/147:153 | No text annotation | ||
| IL_9GMO_009 | 1/A/121:122, 1/A/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_9GMO_010 | 1/A/125:126, 1/A/142:144 | Single bulged C | geometric IL_6XKO_001 IL_05642.1 | |
| IL_9GMO_011 | 1/A/168:173, 1/A/263:267 | No text annotation | ||
| IL_9GMO_012 | 1/A/195:196, 1/A/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9GMO_013 | 1/A/199:201, 1/A/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_9GMO_014 | 1/A/339:342, 1/C/32:33 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_9GMO_015 | 1/A/348:350, 1/C/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_9GMO_016 | 1/A/387:390, 1/A/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_9GMO_017 | 1/A/415:421, 1/C/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_9GMO_018 | 1/A/443:446, 1/A/1300:1304 | No text annotation | geometric IL_7MLW_007 NA | |
| IL_9GMO_019 | 1/A/448:450, 1/A/1297:1298 | No text annotation | ||
| IL_9GMO_020 | 1/A/459:460, 1/A/695:697 | Single bulged C | geometric IL_1S03_006 IL_05642.1 | |
| IL_9GMO_021 | 1/A/462:464, 1/A/691:693 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_01003.1 | |
| IL_9GMO_022 | 1/A/466:472, 1/A/682:689 | No text annotation | ||
| IL_9GMO_024 | 1/A/482:485, 1/A/671:672 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_9GMO_025 | 1/A/486:488, 1/A/665:670 | No text annotation | ||
| IL_9GMO_027 | 1/A/508:510, 1/A/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_9GMO_028 | 1/A/709:710, 1/A/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9GMO_029 | 1/A/723:724, 1/A/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_44609.1 | |
| IL_9GMO_030 | 1/A/727:731, 1/A/938:939 | No text annotation | ||
| IL_9GMO_031 | 1/A/732:735, 1/A/928:937 | No text annotation | ||
| IL_9GMO_032 | 1/A/737:740, 1/A/924:926 | No text annotation | ||
| IL_9GMO_033 | 1/A/740:742, 1/A/922:924 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_01003.1 | |
| IL_9GMO_034 | 1/A/745:752, 1/A/911:919 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_9GMO_035 | 1/A/1073:1074, 1/A/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_9GMO_036 | 1/A/1082:1084, 1/A/1213:1217 | No text annotation | ||
| IL_9GMO_037 | 1/A/1086:1087, 1/A/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9GMO_038 | 1/A/1096:1097, 1/A/1198:1200 | Single bulged G | geometric IL_4LVW_002 IL_28408.1 | |
| IL_9GMO_039 | 1/A/1173:1175, 1/A/1186:1188 | Isolated cWH basepair | geometric IL_5J7L_011 NA | |
| IL_9GMO_040 | 1/A/1244:1245, 1/A/1265:1267 | Single bulged G | geometric IL_8C3A_048 NA | |
| IL_9GMO_041 | 1/A/1357:1360, 1/A/1379:1382 | No text annotation | ||
| IL_9GMO_042 | 1/A/1357:1361, 1/A/1376:1382 | No text annotation | ||
| IL_9GMO_043 | 1/A/1360:1361, 1/A/1376:1379 | Multiple bulged bases | geometric IL_8C3A_400 NA | |
| IL_9GMO_044 | 1/A/1425:1429, 1/A/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_9GMO_045 | 1/A/1431:1434, 1/A/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_58355.1 | |
| IL_9GMO_046 | 1/A/1467:1468, 1/A/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_9GMO_047 | 1/A/1474:1476, 1/A/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_9GMO_048 | 1/A/1479:1480, 1/A/1484:1486 | No text annotation | ||
| IL_9GMO_049 | 1/A/1520:1522, 1/A/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_9GMO_050 | 1/A/1522:1526, 1/A/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_9GMO_051 | 1/A/1545:1546, 1/A/1612:1614 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_9GMO_052 | 1/A/1550:1551, 1/A/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_9GMO_053 | 1/A/1551:1555, 1/A/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_9GMO_054 | 1/A/1586:1589, 1/A/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_9GMO_055 | 1/A/1590:1592, 1/A/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_9GMO_056 | 1/A/1624:1626, 1/A/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_9GMO_057 | 1/A/1671:1673, 1/A/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_9GMO_058 | 1/A/1686:1688, 1/A/1848:1851 | No text annotation | ||
| IL_9GMO_059 | 1/A/1723:1725, 1/A/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_9GMO_060 | 1/A/1732:1737, 1/A/1792:1797 | No text annotation | ||
| IL_9GMO_061 | 1/A/1737:1738, 1/A/1790:1792 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_9GMO_062 | 1/A/1739:1744, 1/A/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_9GMO_161 | 1/A/1746:1751, 1/A/1779:1784 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9GMO_064 | 1/A/1814:1816, 1/A/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.1 | |
| IL_9GMO_065 | 1/A/1858:1860, 1/A/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.1 | |
| IL_9GMO_067 | 1/A/1905:1909, 1/A/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_9GMO_068 | 1/A/1911:1918, 1/A/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_9GMO_069 | 1/A/1918:1920, 1/A/2063:2064 | No text annotation | ||
| IL_9GMO_070 | 1/A/1920:1922, 1/A/2062:2063 | No text annotation | ||
| IL_9GMO_071 | 1/A/1926:1933, 1/A/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_9GMO_072 | 1/A/1933:1944, 1/A/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_9GMO_073 | 1/A/1946:1948, 1/A/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.1 | |
| IL_9GMO_074 | 1/A/2083:2085, 1/A/2272:2273 | Single bulged C | geometric IL_4C7O_003 NA | |
| IL_9GMO_075 | 1/A/2290:2292, 1/A/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_9GMO_076 | 1/A/2299:2301, 1/A/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_9GMO_077 | 1/A/2302:2309, 1/A/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_9GMO_078 | 1/A/2312:2314, 1/A/2325:2326 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_9GMO_079 | 1/A/2358:2364, 1/A/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_9GMO_080 | 1/A/2406:2409, 1/A/2783:2784 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.1 | |
| IL_9GMO_081 | 1/A/2415:2419, 1/A/2427:2429 | C-loop | homologous IL_8C3A_482 NA | |
| IL_9GMO_082 | 1/A/2446:2450, 1/A/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_9GMO_083 | 1/A/2477:2479, 1/A/2499:2500 | Single bulged C | geometric IL_6ZDP_001 NA | |
| IL_9GMO_084 | 1/A/2549:2550, 1/A/2768:2770 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_9GMO_085 | 1/A/2589:2593, 1/A/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.1 | |
| IL_9GMO_086 | 1/A/2613:2614, 1/A/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_9GMO_087 | 1/A/2614:2615, 1/A/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_9GMO_088 | 1/A/2646:2648, 1/A/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9GMO_089 | 1/A/2651:2653, 1/A/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_9GMO_090 | 1/A/2656:2662, 1/A/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_9GMO_091 | 1/A/2704:2705, 1/A/2710:2712 | No text annotation | ||
| IL_9GMO_092 | 1/A/2832:2838, 1/A/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_9GMO_093 | 1/A/2844:2846, 1/A/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_9GMO_094 | 1/A/2847:2850, 1/A/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_9GMO_095 | 1/A/2847:2855, 1/A/3837:3841 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_9GMO_096 | 1/A/2850:2855, 1/A/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_9GMO_097 | 1/A/2867:2872, 1/A/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_9GMO_098 | 1/A/2889:2891, 1/A/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_9GMO_099 | 1/A/2896:2897, 1/A/3602:3605 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_9GMO_100 | 1/A/3632:3633, 1/A/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.1 | |
| IL_9GMO_101 | 1/A/3660:3665, 1/A/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_9GMO_102 | 1/A/3700:3703, 1/A/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_9GMO_103 | 1/A/3704:3705, 1/A/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_9GMO_104 | 1/A/3708:3714, 1/A/3739:3742 | No text annotation | ||
| IL_9GMO_105 | 1/A/3715:3721, 1/A/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_9GMO_106 | 1/A/3780:3781, 1/A/3811:3814 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_9GMO_107 | 1/A/3781:3792, 1/A/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_9GMO_108 | 1/A/3895:3898, 1/A/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_9GMO_109 | 1/A/3900:3902, 1/A/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_9GMO_110 | 1/A/3913:3915, 1/A/4388:4389 | Single bulged U | homologous IL_8P9A_321 IL_97561.1 | |
| IL_9GMO_111 | 1/A/3916:3917, 1/A/4384:4387 | Minor groove platform | homologous IL_8P9A_322 IL_34520.1 | |
| IL_9GMO_112 | 1/A/3927:3929, 1/A/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_9GMO_113 | 1/A/4082:4088, 1/A/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_9GMO_114 | 1/A/4191:4192, 1/A/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.1 | |
| IL_9GMO_115 | 1/A/4243:4245, 1/A/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_9GMO_116 | 1/A/4291:4293, 1/A/4317:4318 | Single bulged A | geometric IL_8C3A_014 NA | |
| IL_9GMO_117 | 1/A/4295:4298, 1/A/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.1 | |
| IL_9GMO_118 | 1/A/4347:4350, 1/A/4364:4365 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_9GMO_119 | 1/A/4400:4405, 1/A/4439:4444 | No text annotation | ||
| IL_9GMO_120 | 1/A/4405:4407, 1/A/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_9GMO_121 | 1/A/4412:4416, 1/A/4426:4430 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.1 | |
| IL_9GMO_122 | 1/A/4453:4454, 1/A/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_9GMO_123 | 1/A/4456:4458, 1/A/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_9GMO_124 | 1/A/4458:4459, 1/A/4517:4520 | No text annotation | homologous IL_8P9A_336 IL_44609.1 | |
| IL_9GMO_125 | 1/A/4466:4468, 1/A/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8C3A_118 NA | |
| IL_9GMO_126 | 1/A/4466:4470, 1/A/4485:4491 | No text annotation | ||
| IL_9GMO_127 | 1/A/4468:4470, 1/A/4485:4489 | No text annotation | ||
| IL_9GMO_128 | 1/A/4495:4497, 1/A/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_01003.1 | |
| IL_9GMO_129 | 1/A/4537:4538, 1/A/4547:4549 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_9GMO_130 | 1/A/4580:4582, 1/A/4721:4723 | Isolated cWH basepair | geometric IL_3R1C_017 IL_10892.1 | |
| IL_9GMO_131 | 1/A/4582:4585, 1/A/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_9GMO_132 | 1/A/4590:4592, 1/A/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_9GMO_133 | 1/A/4596:4603, 1/A/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_9GMO_134 | 1/A/4624:4629, 1/A/4669:4673 | No text annotation | ||
| IL_9GMO_135 | 1/A/4632:4637, 1/A/4662:4666 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_9GMO_136 | 1/A/4638:4640, 1/A/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.1 | |
| IL_9GMO_137 | 1/A/4641:4642, 1/A/4655:4658 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_9GMO_138 | 1/A/4681:4685, 1/A/4705:4709 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_9GMO_139 | 1/A/4739:4742, 1/A/4958:4960 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_9GMO_140 | 1/A/4743:4746, 1/A/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_9GMO_141 | 1/A/4749:4751, 1/A/4948:4951 | No text annotation | ||
| IL_9GMO_142 | 1/A/4756:4765, 1/A/4869:4877 | No text annotation | ||
| IL_9GMO_143 | 1/A/4885:4889, 1/A/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
| IL_9GMO_144 | 1/A/4891:4896, 1/A/4924:4928 | No text annotation | ||
| IL_9GMO_145 | 1/A/4899:4901, 1/A/4920:4921 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9GMO_146 | 1/A/4972:4975, 1/A/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_9GMO_147 | 1/A/4992:4994, 1/A/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.1 | |
| IL_9GMO_148 | 1/A/4996:4997, 1/A/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_9GMO_149 | 1/A/5000:5002, 1/A/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_9GMO_150 | 1/A/5003:5009, 1/A/5039:5044 | No text annotation | ||
| IL_9GMO_151 | 1/A/5012:5014, 1/A/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_9GMO_152 | 1/A/5014:5017, 1/A/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_9GMO_153 | 1/B/15:16, 1/B/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_9GMO_154 | 1/B/21:27, 1/B/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_9GMO_155 | 1/B/28:29, 1/B/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.1 | |
| IL_9GMO_156 | 1/B/32:36, 1/B/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_9GMO_157 | 1/B/71:78, 1/B/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_9GMO_158 | 1/B/79:81, 1/B/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 | |
| IL_9GMO_159 | 1/B/82:85, 1/B/92:94 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_9GMO_160 | 1/C/64:66, 1/C/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9GMO_023 | Isolated cWH basepair | ||
| IL_9GMO_026 | Single bulged U | ||
| IL_9GMO_063 | No text annotation | ||
| IL_9GMO_066 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9GMO_001 | 1/A/112:116, 1/A/155:160, 1/A/275:278 | No text annotation | ||
| J3_9GMO_002 | 1/A/196:199, 1/A/215:228, 1/A/240:244 | No text annotation | ||
| J3_9GMO_003 | 1/A/351:367, 1/A/374:379, 1/C/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_9GMO_004 | 1/A/380:387, 1/A/414:415, 1/C/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_9GMO_005 | 1/A/380:390, 1/A/401:415, 1/C/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_9GMO_006 | 1/A/451:455, 1/A/701:705, 1/A/1292:1296 | No text annotation | ||
| J3_9GMO_007 | 1/A/1531:1537, 1/A/1622:1624, 1/A/1640:1643 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_9GMO_008 | 1/A/1546:1548, 1/A/1580:1584, 1/A/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_9GMO_009 | 1/A/1726:1727, 1/A/1802:1806, 1/A/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_9GMO_010 | 1/A/2393:2399, 1/A/2805:2807, 1/A/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9GMO_011 | 1/A/2402:2405, 1/A/2785:2791, 1/A/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_9GMO_012 | 1/A/2440:2445, 1/A/2515:2519, 1/A/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9GMO_013 | 1/A/2451:2456, 1/A/2465:2476, 1/A/2501:2508 | No text annotation | homologous J3_8CRE_016 NA | |
| J3_9GMO_014 | 1/A/2551:2555, 1/A/2572:2575, 1/A/2757:2767 | No text annotation | ||
| J3_9GMO_015 | 1/A/2575:2576, 1/A/2585:2589, 1/A/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_9GMO_016 | 1/A/2598:2602, 1/A/2737:2738, 1/A/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_9GMO_017 | 1/A/3937:3939, 1/A/4074:4078, 1/A/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9GMO_018 | 1/A/4228:4230, 1/A/4331:4342, 1/A/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_9GMO_019 | 1/A/4241:4243, 1/A/4267:4269, 1/A/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9GMO_020 | 1/A/4463:4466, 1/A/4491:4493, 1/A/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_9GMO_021 | 1/A/4751:4754, 1/A/4879:4883, 1/A/4936:4948 | No text annotation | ||
| J3_9GMO_022 | 1/B/9:14, 1/B/65:66, 1/B/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9GMO_023 | 1/C/44:45, 1/C/58:64, 1/C/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_9GMO_001 | 1/A/111:112, 1/A/278:283, 1/A/304:310, 1/A/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9GMO_002 | 1/A/196:199, 1/A/215:222, 1/A/226:228, 1/A/240:244 | No text annotation | ||
| J4_9GMO_003 | 1/A/981:983, 1/A/1070:1072, 1/A/1240:1243, 1/A/1268:1273 | No text annotation | ||
| J4_9GMO_004 | 1/A/2365:2371, 1/A/2389:2391, 1/A/2824:2829, 1/A/3856:3857 | No text annotation | ||
| J4_9GMO_005 | 1/A/2406:2410, 1/A/2434:2439, 1/A/2538:2539, 1/A/2777:2784 | No text annotation | ||
| J4_9GMO_006 | 1/A/2409:2410, 1/A/2434:2439, 1/A/2538:2539, 1/A/2777:2783 | No text annotation | ||
| J4_9GMO_007 | 1/A/2451:2456, 1/A/2465:2469, 1/A/2471:2476, 1/A/2501:2508 | No text annotation | ||
| J4_9GMO_008 | 1/A/2618:2619, 1/A/2637:2642, 1/A/2692:2698, 1/A/2718:2719 | No text annotation | ||
| J4_9GMO_009 | 1/A/3634:3638, 1/A/3650:3654, 1/A/3690:3694, 1/A/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_9GMO_010 | 1/A/3696:3698, 1/A/3752:3753, 1/A/3771:3780, 1/A/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_9GMO_011 | 1/A/4231:4235, 1/A/4289:4291, 1/A/4318:4319, 1/A/4328:4330 | No text annotation | ||
| J4_9GMO_012 | 1/A/4587:4590, 1/A/4620:4621, 1/A/4676:4678, 1/A/4712:4715 | No text annotation | ||
| J5_9GMO_001 | 1/A/19:21, 1/C/35:42, 1/C/101:106, 1/C/113:114, 1/C/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_9GMO_002 | 1/A/1335:1340, 1/A/1516:1519, 1/A/1658:1661, 1/A/2288:2290, 1/A/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_9GMO_003 | 1/A/2855:2863, 1/A/2887:2888, 1/A/3613:3614, 1/A/3618:3626, 1/A/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_9GMO_004 | 1/A/3903:3910, 1/A/4392:4400, 1/A/4444:4453, 1/A/4528:4534, 1/A/4552:4557 | No text annotation | ||
| J5_9GMO_005 | 1/A/3920:3923, 1/A/4188:4191, 1/A/4204:4205, 1/A/4227:4228, 1/A/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_9GMO_001 | 1/A/21:26, 1/A/57:67, 1/A/74:78, 1/A/105:109, 1/A/332:339, 1/C/33:35 | No text annotation | ||
| J6_9GMO_002 | 1/A/1352:1355, 1/A/1384:1388, 1/A/1395:1399, 1/A/1418:1421, 1/A/1464:1466, 1/A/1499:1504 | No text annotation | ||
| J6_9GMO_003 | 1/A/3920:3923, 1/A/4188:4191, 1/A/4204:4205, 1/A/4227:4230, 1/A/4331:4342, 1/A/4370:4381 | No text annotation | ||
| J7_9GMO_001 | 1/A/1666:1671, 1/A/1684:1685, 1/A/1852:1855, 1/A/1879:1884, 1/A/1895:1899, 1/A/2077:2078, 1/A/2278:2283 | No text annotation |
Problematic loops
No problematic loops
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