HL_9GMO_009
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 9GMO|1|A|G|315, 9GMO|1|A|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1411
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9GMO|1|A|G|314
9GMO|1|A|G|315
9GMO|1|A|U|316
9GMO|1|A|A|317
9GMO|1|A|A|318
9GMO|1|A|A|319
9GMO|1|A|C|320
9GMO|1|A|U|321
9GMO|1|A|C|322
9GMO|1|A|C|323
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L36
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L15
Coloring options: