HL_9GMO_011

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAAG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_011 not in the Motif Atlas

Homologous match to HL_8P9A_123

Geometric discrepancy: 0.1204

The information below is about HL_8P9A_123

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9GMO|1|A|U|393
9GMO|1|A|G|394
9GMO|1|A|A|395
9GMO|1|A|A|396
9GMO|1|A|G|397
9GMO|1|A|A2M|398

Current chains

Chain A

28S rRNA

Nearby chains

Chain 0

Cytoplasmic 60S subunit biogenesis factor ZNF622

Chain J

60S ribosomal protein L17