3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
UGAAG(A2M)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GMO_011 not in the Motif Atlas
Homologous match to HL_8P9A_123
Geometric discrepancy: 0.1204
The information below is about HL_8P9A_123
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

9GMO|1|A|U|393
9GMO|1|A|G|394
9GMO|1|A|A|395
9GMO|1|A|A|396
9GMO|1|A|G|397
9GMO|1|A|A2M|398

Current chains

Chain A
28S rRNA

Nearby chains

Chain 0
Cytoplasmic 60S subunit biogenesis factor ZNF622
Chain J
60S ribosomal protein L17

Coloring options:


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