HL_9GMO_025

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

9GMO|1|A|C|2258, 9GMO|1|A|G|2259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_025 not in the Motif Atlas

Geometric match to HL_8C3A_072

Geometric discrepancy: 0.2346

The information below is about HL_8C3A_072

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9GMO|1|A|C|2257
9GMO|1|A|C|2258
9GMO|1|A|G|2259
9GMO|1|A|C|2260
9GMO|1|A|G|2261

Current chains

Chain A

28S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6

Chain k

60S ribosomal protein L28