HL_9GMO_027

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_027 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1202

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9GMO|1|A|A|2376
9GMO|1|A|C|2377
9GMO|1|A|G|2378
9GMO|1|A|A|2379
9GMO|1|A|G|2380
9GMO|1|A|A|2381
9GMO|1|A|A|2382
9GMO|1|A|C|2383
9GMO|1|A|U|2384

Current chains

Chain A

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L17

Chain L

60S ribosomal protein L19

Chain X

60S ribosomal protein L31