HL_9GMO_029

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_029 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.136

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9GMO|1|A|C|2458
9GMO|1|A|G|2459
9GMO|1|A|A|2460
9GMO|1|A|G|2461
9GMO|1|A|C|2462
9GMO|1|A|G|2463

Current chains

Chain A

28S rRNA

Nearby chains

Chain d

60S ribosomal protein L37

Chain l

60S ribosomal protein L15