HL_9GMO_038

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

9GMO|1|A|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_038 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.2059

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GMO|1|A|U|2810
9GMO|1|A|G|2811
9GMO|1|A|A|2812
9GMO|1|A|A|2813
9GMO|1|A|C|2814
9GMO|1|A|A2M|2815
9GMO|1|A|G|2816

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19