HL_9GMO_042

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9GMO|1|A|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_042 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0784

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9GMO|1|A|C|3668
9GMO|1|A|G|3669
9GMO|1|A|C|3670
9GMO|1|A|G|3671
9GMO|1|A|G|3672
9GMO|1|A|C|3673
9GMO|1|A|G|3674

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain l

60S ribosomal protein L15