HL_9GMO_043

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_043 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.1501

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GMO|1|A|A2M|3724
9GMO|1|A|G|3725
9GMO|1|A|A|3726
9GMO|1|A|A|3727
9GMO|1|A|A|3728
9GMO|1|A|U|3729

Current chains

Chain A

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L36

Chain i

60S ribosomal protein L36a