HL_9GMO_045

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9GMO|1|A|A|3876, 9GMO|1|A|A|3877, 9GMO|1|A|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_045 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0754

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9GMO|1|A|G|3873
9GMO|1|A|G|3874
9GMO|1|A|G|3875
9GMO|1|A|A|3876
9GMO|1|A|A|3877
9GMO|1|A|C|3878
9GMO|1|A|G|3879
9GMO|1|A|G|3880
9GMO|1|A|G|3881
9GMO|1|A|C|3882

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain Y

60S ribosomal protein L32