HL_9GMO_046

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9GMO|1|A|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_046 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1044

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9GMO|1|A|C|4193
9GMO|1|A|U|4194
9GMO|1|A|G|4195
9GMO|1|A|OMG|4196
9GMO|1|A|G|4197
9GMO|1|A|G|4198
9GMO|1|A|C|4199
9GMO|1|A|G|4200
9GMO|1|A|G|4201

Current chains

Chain A

28S rRNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain p

Large ribosomal subunit protein uL16