HL_9GMO_049

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_049 not in the Motif Atlas

Homologous match to HL_8P9A_168

Geometric discrepancy: 0.121

The information below is about HL_8P9A_168

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

9GMO|1|A|C|4270
9GMO|1|A|A|4271
9GMO|1|A|G|4272
9GMO|1|A|A|4273
9GMO|1|A|A|4274
9GMO|1|A|G|4275
9GMO|1|A|G|4276
9GMO|1|A|G|4277

Current chains

Chain A

28S rRNA

Nearby chains

Chain N

60S ribosomal protein L21

Chain i

60S ribosomal protein L36a

Chain p

Large ribosomal subunit protein uL16