HL_9GMO_052
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 9GMO|1|A|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_052 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2495
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GMO|1|A|U|4352
9GMO|1|A|PSU|4353
9GMO|1|A|U|4354
9GMO|1|A|G|4355
9GMO|1|A|G|4356
9GMO|1|A|G|4357
9GMO|1|A|U|4358
9GMO|1|A|U|4359
9GMO|1|A|U|4360
9GMO|1|A|PSU|4361
9GMO|1|A|A|4362
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L36
- Chain i
- 60S ribosomal protein L36a
- Chain r
- 60S ribosomal protein L13
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