HL_9GMO_056

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_056 not in the Motif Atlas

Homologous match to HL_8P9A_175

Geometric discrepancy: 0.1135

The information below is about HL_8P9A_175

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GMO|1|A|C|4540
9GMO|1|A|G|4541
9GMO|1|A|U|4542
9GMO|1|A|G|4543
9GMO|1|A|A|4544
9GMO|1|A|G|4545

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8