HL_9GMO_059
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- C(PSU)GAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9GMO|1|A|G|4694, 9GMO|1|A|C|4698
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_059 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0662
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9GMO|1|A|C|4688
9GMO|1|A|PSU|4689
9GMO|1|A|G|4690
9GMO|1|A|A|4691
9GMO|1|A|A|4692
9GMO|1|A|C|4693
9GMO|1|A|G|4694
9GMO|1|A|C|4695
9GMO|1|A|C|4696
9GMO|1|A|U|4697
9GMO|1|A|C|4698
9GMO|1|A|U|4699
9GMO|1|A|A|4700
9GMO|1|A|A|4701
9GMO|1|A|G|4702
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L13a
- Chain g
- Ubiquitin-60S ribosomal protein L40
- Chain o
- 60S ribosomal protein L9
Coloring options: