3D structure

PDB id
9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-TEC complex in delivery state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.17 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
9GR1|1|a|5MU|749, 9GR1|1|a|A|753, 9GR1|1|a|A|754
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GR1_056 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.1066
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50204.1
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
11

Unit IDs

9GR1|1|a|U|746
9GR1|1|a|1MG|747
9GR1|1|a|PSU|748
9GR1|1|a|5MU|749
9GR1|1|a|G|750
9GR1|1|a|A|751
9GR1|1|a|A|752
9GR1|1|a|A|753
9GR1|1|a|A|754
9GR1|1|a|A|755

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain d
Large ribosomal subunit protein uL3
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1463 s