3D structure

PDB id
9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-TEC complex in delivery state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.17 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
9GR1|1|a|A|1917
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GR1_078 not in the Motif Atlas
Homologous match to HL_9DFE_046
Geometric discrepancy: 0.2427
The information below is about HL_9DFE_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82185.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9GR1|1|a|G|1914
9GR1|1|a|PSU|1915
9GR1|1|a|A|1916
9GR1|1|a|A|1917
9GR1|1|a|C|1918
9GR1|1|a|3TD|1919
9GR1|1|a|A|1920
9GR1|1|a|PSU|1921
9GR1|1|a|A|1922
9GR1|1|a|A|1923
9GR1|1|a|C|1924

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain X
mRNA in ribosome channel
Chain Y
Transfer RNA; tRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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