HL_9GR1_079

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9GR1|1|a|U|1959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_079 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0499

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9GR1|1|a|G|1953
9GR1|1|a|G|1954
9GR1|1|a|U|1955
9GR1|1|a|A|1956
9GR1|1|a|A|1957
9GR1|1|a|G|1958
9GR1|1|a|U|1959
9GR1|1|a|U|1960
9GR1|1|a|C|1961

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14