HL_9GR1_081

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGAUCG

Length

7 nucleotides

Bulged bases

9GR1|1|a|G|2215, 9GR1|1|a|U|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_081 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.3479

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9GR1|1|a|C|2213
9GR1|1|a|U|2214
9GR1|1|a|G|2215
9GR1|1|a|A|2216
9GR1|1|a|U|2217
9GR1|1|a|C|2218
9GR1|1|a|G|2219

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2