HL_9GR1_083

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9GR1|1|a|A|2272, 9GR1|1|a|C|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_083 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0386

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GR1|1|a|C|2268
9GR1|1|a|U|2269
9GR1|1|a|A|2270
9GR1|1|a|A|2271
9GR1|1|a|A|2272
9GR1|1|a|G|2273
9GR1|1|a|A|2274
9GR1|1|a|G|2275
9GR1|1|a|U|2276
9GR1|1|a|A|2277
9GR1|1|a|A|2278
9GR1|1|a|C|2279
9GR1|1|a|G|2280

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27