HL_9GR1_090

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9GR1|1|a|G|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_090 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GR1|1|a|U|2532
9GR1|1|a|G|2533
9GR1|1|a|A|2534
9GR1|1|a|A|2535
9GR1|1|a|G|2536
9GR1|1|a|U|2537
9GR1|1|a|A|2538
9GR1|1|a|G|2539

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6