HL_9GUL_062

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9GUL|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUL_062 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.0873

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9GUL|1|L5|A|4474
9GUL|1|L5|G|4475
9GUL|1|L5|C|4476
9GUL|1|L5|A|4477
9GUL|1|L5|G|4478
9GUL|1|L5|A|4479
9GUL|1|L5|A|4480
9GUL|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40