HL_9GUP_006

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9GUP|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0906

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GUP|1|A|G|259
9GUP|1|A|G|260
9GUP|1|A|U|261
9GUP|1|A|A|262
9GUP|1|A|A|263
9GUP|1|A|C|264
9GUP|1|A|G|265
9GUP|1|A|G|266
9GUP|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S17

Chain U

30S ribosomal protein S20