HL_9GUP_018

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9GUP|1|A|C|841, 9GUP|1|A|U|842, 9GUP|1|A|U|843, 9GUP|1|A|G|844, 9GUP|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2423

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9GUP|1|A|C|840
9GUP|1|A|C|841
9GUP|1|A|U|842
9GUP|1|A|U|843
9GUP|1|A|G|844
9GUP|1|A|A|845
9GUP|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S18

Chain X

mRNA