HL_9GUP_028

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_028 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.109

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GUP|1|A|C|1265
9GUP|1|A|G|1266
9GUP|1|A|C|1267
9GUP|1|A|G|1268
9GUP|1|A|A|1269
9GUP|1|A|G|1270

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13

Chain T

30S ribosomal protein S19