HL_9GUQ_018

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9GUQ|1|A|C|841, 9GUQ|1|A|U|842, 9GUQ|1|A|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUQ_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2264

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9GUQ|1|A|C|840
9GUQ|1|A|C|841
9GUQ|1|A|U|842
9GUQ|1|A|U|843
9GUQ|1|A|G|844
9GUQ|1|A|A|845
9GUQ|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S1

Chain S

30S ribosomal protein S18