HL_9GUT_018

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9GUT|1|A|C|841, 9GUT|1|A|U|842, 9GUT|1|A|U|843, 9GUT|1|A|G|844, 9GUT|1|A|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUT_018 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3226

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9GUT|1|A|C|840
9GUT|1|A|C|841
9GUT|1|A|U|842
9GUT|1|A|U|843
9GUT|1|A|G|844
9GUT|1|A|A|845
9GUT|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S18

Chain X

mRNA