HL_9GUV_006

3D structure

PDB id

9GUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (closed-head)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9GUV|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUV_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0546

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GUV|1|A|G|259
9GUV|1|A|G|260
9GUV|1|A|U|261
9GUV|1|A|A|262
9GUV|1|A|A|263
9GUV|1|A|C|264
9GUV|1|A|G|265
9GUV|1|A|G|266
9GUV|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S17

Chain U

30S ribosomal protein S20