HL_9GXX_023

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9GXX|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_023 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0719

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9GXX|1|A|G|1089
9GXX|1|A|U|1090
9GXX|1|A|U|1091
9GXX|1|A|A|1092
9GXX|1|A|A|1093
9GXX|1|A|G|1094
9GXX|1|A|U|1095
9GXX|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein bS21