HL_9GXX_032
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9GXX|1|V|U|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GXX_032 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.276
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9GXX|1|V|G|31
9GXX|1|V|C|32
9GXX|1|V|U|33
9GXX|1|V|C|34
9GXX|1|V|A|35
9GXX|1|V|U|36
9GXX|1|V|A|37
9GXX|1|V|A|38
9GXX|1|V|C|39
Current chains
- Chain V
- tRNA(fMet)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein uS11
- Chain X
- mRNA
- Chain Z
- Transfer RNA; tRNA
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